Publications citing j5

Publications citing j5

274.  Lee, N., Schmidt, M., Li, C. et al. Retrobiosynthesis of unnatural lactams via reprogrammed polyketide synthase. Nat Catal (2025). https://doi.org/10.1038/s41929-025-01325-6 

273. Zhiyang Hou, Qiyi Yi, Mengying Wu, Lijun Wu, Fanghua Li, Ting Wang, and Po Bian. (2025) "Assessment and Mitigation of CRISPR-Cas9-Induced Nontargeted Translocations".  Advanced Science https://doi.org/10.1002/advs.202414415

272. Matthias Schmidt, Aaron A. Vilchez, Namil Lee, Leah S. Keiser, Allison N. Pearson, Mitchell G. Thompson, Yolanda Zhu, Robert W. Haushalter, Adam M. Deutschbauer, Satoshi Yuzawa, Lars M. Blank, Jay D. Keasling. (2025) "Engineering Pseudomonas putida for production of 3-hydroxyacids using hybrid type I polyketide synthases" Metabolic Engineering Communications, https://doi.org/10.1016/j.mec.2025.e00261 

271. Matthew J. Szarzanowicz, Lucas M. Waldburger, Michael Busche, Gina M. Geiselman, Liam D. Kirkpatrick, Alexander J. Kehl, Claudine Tahmin, Rita C. Kuo, Joshua McCauley, Hamreet Pannu, Ruoming Cui, Shuying Liu, Nathan J. Hillson, Jacob O. Brunkard, Jay D. Keasling, John M. Gladden, Mitchell G. Thompson, Patrick M. Shih. (2024) "Binary vector copy number engineering improves Agrobacterium-mediated transformation". Nat Biotechnol https://doi.org/10.1038/s41587-024-02462-2

270. Y. Torres-Tiji, H. Sethuram, A. Gupta, J. McCauley, J.-V. Dutra-Molino, R. Pathania, L. Saxton, K. Kang, N. J. Hillson, and S. P. Mayfield. (2024) "Bioinformatic Prediction and High Throughput In Vivo Screening to Identify Cis-Regulatory Elements for the Development of Algal Synthetic Promoters" ACS Synthetic Biology 13 (7), 2150-2165 https://pubs.acs.org/doi/10.1021/acssynbio.4c00199 

269. Pengju Wang, Yidan Ma, Ju Li, Junchang Su, Junxi Chi, Xingmiao Zhu, Xinna Zhu, Chunzhi Zhang, Changhao Bi, and Xueli Zhang. 2024 "Exploring the De Novo NMN Biosynthesis as an Alternative Pathway to Enhance NMN Production" ACS Synthetic Biology 13 (8), 2425-2435 https://pubs.acs.org/doi/10.1021/acssynbio.4c00115 

268. Hou, Z., Yu, T., Yi, Q. et al. (2024) "High-complexity of DNA double-strand breaks is key for alternative end-joining choice" Commun Biol 7, 936. https://doi.org/10.1038/s42003-024-06640-5 

267. Patarasuda Chaisupa, Md Mahbubur Rahman, Sherry B. Hildreth, Saede Moseley, Chauncey Gatling, Matthew R. Bryant, Richard F. Helm, and R. Clay Wright. (2024) "Genetically Encoded, Noise-Tolerant, Auxin Biosensors in Yeast" ACS Synthetic Biology 13 (9), 2804-2819 https://pubs.acs.org/doi/10.1021/acssynbio.4c00186 

266. Chi, J., Wang, P., Ma, Y. et al. (2024) "Engineering Escherichia coli for utilization of PET degraded ethylene glycol as sole feedstock" Biotechnol Biofuels 17, 121. https://doi.org/10.1186/s13068-024-02568-4 

265. Bozkurt EU, Ørsted EC, Volke DC, Nikel PI. (2024) "Accelerating enzyme discovery and engineering with high-throughput screening." Nat Prod Rep. https://pubs.rsc.org/en/content/articlelanding/2024/np/d4np00031e 

264. Bryant, J.A., Wright, R.C. (2025). "Biofoundry-Assisted Golden Gate Cloning with AssemblyTron". In: Schindler, D. (eds) Golden Gate Cloning. Methods in Molecular Biology, vol 2850. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-4220-7_8 

263. Matzko, R., Konur, S. (2024) "Technologies for design-build-test-learn automation and computational modelling across the synthetic biology workflow: a review." Netw Model Anal Health Inform Bioinforma 13, 22. https://doi.org/10.1007/s13721-024-00455-4

262. Laura Adam and George H. McArthur, IV. (2024) "Substitution Attacks: A Catalyst to Reframe the DNA Manufacturing Cyberbiosecurity Landscape in the Age of Benchtop Synthesizers" Applied Biosafety https://doi.org/10.1089/apb.2023.0035

261. Ke’Koa CDH Wells, Nawwaf Kharma, Brandon B. Jaunky, Kaiyu Nie, Gabriel Aguiar-Tawil, Daniel Berry. (2024) "BioCloneBot: A versatile, low-cost, and open-source automated liquid handler" HardwareX https://doi.org/10.1016/j.ohx.2024.e00516

260. Yuxin Ma, Zhaoyang Zhang, Bin Jia, Yingjin Yuan. (2024) "Automated high-throughput DNA synthesis and assembly" Heliyon https://doi.org/10.1016/j.heliyon.2024.e26967

259. Chunhe Yang, Yi Yang, Guangyun Chu, Ruoyu Wang, Haoran Li, Yufeng Mao, Meng Wang, Jian Zhang, Xiaoping Liao*, and Hongwu Ma. (2024) "AutoESDCas: A Web-Based Tool for the Whole-Workflow Editing Sequence Design for Microbial Genome Editing Based on the CRISPR/Cas System" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.4c00063

258. Christoph Wagner, Uriel Urquiza-Garcia, Matias D. Zurbriggen, Hannes M. Beyer. (2024) "GMOCU: Digital Documentation, Management, and Biological Risk Assessment of Genetic Parts". Advanced Biology https://doi.org/10.1002/adbi.202300529

257. Allison N. Pearson, Matthew R. Incha, Cindy N. Ho, Matthias Schmidt, Jacob B. Roberts, Alberto A. Nava, and Jay D. Keasling. (2023) "Characterization and Diversification of AraC/XylS Family Regulators Guided by Transposon Sequencing" ACS Synthetic Biology https://pubs.acs.org/doi/10.1021/acssynbio.3c00441

256. Alberto A. Nava, Anna Lisa Fear, Namil Lee, Peter Mellinger, Guangxu Lan, Joshua McCauley, Stephen Tan, Nurgul Kaplan, Garima Goyal, R. Cameron Coates, Jacob Roberts, Zahmiria Johnson, Romina Hu, Bryan Wu, Jared Ahn, Woojoo E. Kim, Yao Wan, Kevin Yin, Nathan Hillson, Robert W. Haushalter, and Jay D. Keasling. (2023) "Automated Platform for the Plasmid Construction Process" ACS Synthetic Biology 2023 12 (12), 3506-3513 https://pubs.acs.org/doi/10.1021/acssynbio.3c00292

255. Ataii N, Bakshi S, Chen Y, Fernandez M, Shao Z, et al. (2023) "Enabling AI in synthetic biology through Construction File specification". PLOS ONE 18(11): e0294469. https://doi.org/10.1371/journal.pone.0294469 

254. Hou, Zhiyang, Zelin Xu, Mengying Wu, Liqiu Ma, Li Sui, Po Bian, and Ting Wang. 2023. "Enhancement of Repeat-Mediated Deletion Rearrangement Induced by Particle Irradiation in a RecA-Dependent Manner in Escherichia coli" Biology 12, no. 11: 1406. https://doi.org/10.3390/biology12111406 

253. Chunlin Tan, Ping Xu, Fei Tao. (2022) "Harnessing Interactional Sensory Genes for Rationally Reprogramming Chaotic Metabolism". Research. https://doi.org/10.34133/research.0017

252. Zhandong Wei, Dongdong Zhao, Jie Wang, Ju Li, Ning Xu, Chao Ding, Jun Liu, Siwei Li, Chunzhi Zhang zhangcz@dlpu.edu.cn, Changhao Bi. (2023) "Targeted C-to-T and A-to-G dual mutagenesis system for RhtA transporter in vivo evolution" Genetics and Molecular Biology DOI: https://doi.org/10.1128/aem.00752-23

251. Mansoor A. Siddiqui, Ashima Sharma, Syed Shams Yazdani, "Chapter 6 - Design, building, and challenges in synthetic genomics", Editor(s): Vijai Singh, New Frontiers and Applications of Synthetic Biology, Academic Press, 2022, Pages 67-82 https://doi.org/10.1016/B978-0-12-824469-2.00002-6

250. Matthias Schmidt, Namil Lee, Chunjun Zhan, Jacob B. Roberts, Alberto A. Nava, Leah S. Keiser, Aaron A. Vilchez, Yan Chen, Christopher J. Petzold, Robert W. Haushalter, Lars M. Blank, and Jay D. Keasling. (2023) "Maximizing Heterologous Expression of Engineered Type I Polyketide Synthases: Investigating Codon Optimization Strategies" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.3c00367

249. Yang Liu, Haijiao Cheng, Haoni Li, Yingzhe Zhang, Meng Wang. (2023) "A Programmable CRISPR/Cas9 Toolkit Improves Lycopene Production in Bacillus subtilis" Applied and Industrial Microbiology DOI: https://doi.org/10.1128/aem.00230-23

248. Wang, B. et al. (2023). Synthetic Biology: Technical Issues. In: Ning, K., Zhan, Y. (eds) Synthetic Biology and iGEM: Techniques, Development and Safety Concerns. Springer, Singapore. https://doi.org/10.1007/978-981-99-2460-8_4

247. Wang, P., Zhao, D., Li, J., Su, J., Zhang, C., Li, S., Fan, F., Dai, Z., Liao, X., Mao, Z., Bi, C., Zhang, X., Artificial Diploid Escherichia coli by a CRISPR Chromosome-Doubling Technique. Adv. Sci. 2023, 10, 2205855. https://doi.org/10.1002/advs.202205855 

246. John A Bryant, Mason Kellinger, Cameron Longmire, Ryan Miller, R Clay Wright, AssemblyTron: flexible automation of DNA assembly with Opentrons OT-2 lab robots, Synthetic Biology, Volume 8, Issue 1, 2023, ysac032, https://doi.org/10.1093/synbio/ysac032

245. S. R. Little, J. M. Perry, K. Samlali, and S. C. C. Shih, in Droplet Microfluidics, ed. C. Ren and A. Lee, The Royal Society of Chemistry, 2020, pp. 193-222. https://doi.org/10.1039/9781839162855-00193

244. Patel, D. (2023). Exploring the Frontiers of Microfluidics: Challenges and Future Prospects. In R. Singh, R. Phanden, B. Sikarwar, & J. Davim (Eds.), Advances in MEMS and Microfluidic Systems (pp. 11-31). IGI Global. https://doi.org/10.4018/978-1-6684-6952-1.ch002  https://www.igi-global.com/gateway/chapter/324986 

243. Tien T. Sword, J. William Barker, Madeline Spradley, Yan Chen, Christopher J. Petzold, Constance B. Bailey. (2023) "Expression of blue pigment synthetase a from Streptomyces lavenduale reveals insights on the effects of refactoring biosynthetic megasynthases for heterologous expression in Escherichia coli", Protein Expression and Purification, Volume 210, 106317, ISSN 1046-5928, https://doi.org/10.1016/j.pep.2023.106317 https://www.sciencedirect.com/science/article/pii/S1046592823000888 

242. Xue Zhao, Mahbubur Rahman, Zhiyuan Xu, Tom Kasputis, Yawen He, Lijuan Yuan, R. Clay Wright, and Juhong Chen. "Engineered Yeast Displaying Specific Norovirus-Binding Nanobodies for the Concentration and Detection of Human Norovirus in Food Matrix". Journal of Agricultural and Food Chemistry Article ASAP DOI: 10.1021/acs.jafc.3c01946 https://pubs.acs.org/doi/10.1021/acs.jafc.3c01946

241. Pearson AN, Thompson MG, Kirkpatrick LD, Ho C, Vuu KM, Waldburger LM, Keasling JD, Shih PM. The pGinger Family of Expression Plasmids. Microbiol Spectr. 2023 May 22:e0037323. doi: 10.1128/spectrum.00373-23 https://journals.asm.org/doi/10.1128/spectrum.00373-23

240.  John A Bryant Jr, Mason Kellinger, Cameron Longmire, Ryan Miller, R Clay Wright. (2022) "AssemblyTron: Flexible automation of DNA assembly with Opentrons OT-2 lab robots" OUP Synthetic Biology, https://doi.org/10.1093/synbio/ysac032

239. Li Liu, Wenbo Li, Ju Li, Dongdong Zhao, Siwei Li, Guo Jiang, Jie Wang, Xuxu Chen, Changhao Bi*, and Xueli Zhang. (2022) "Circular Guide RNA for Improved Stability and CRISPR-Cas9 Editing Efficiency in Vitro and in Bacteria" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.2c00381

238. Su, J., Wang, P., Li, J. et al. A CRISPR-based chromosomal-separation technique for Escherichia coli. Microb Cell Fact 21, 235 (2022). https://doi.org/10.1186/s12934-022-01957-4 https://microbialcellfactories.biomedcentral.com/articles/10.1186/s12934-022-01957-4 

237. Xiaole Yang, Kimberly A. Kowallis, W. Seth Childers, Chapter Ten - Protein engineering strategies to stimulate the functions of bacterial pseudokinases, Editor(s): Natalia Jura, James M. Murphy, Methods in Enzymology, Academic Press, Volume 667, 2022, Pages 275-302, https://doi.org/10.1016/bs.mie.2022.03.030 https://www.sciencedirect.com/science/article/pii/S0076687922001215

236. Garber, M.E., Fregoso, R., Lake, J. et al. Pseudomonas response regulators produced in an E. coli heterologous expression host exhibit host-derived post-translational phosphorylation. Sci Rep 12, 10336 (2022). https://doi.org/10.1038/s41598-022-13525-2

235. Yi Yang, Yufeng Mao, Ruoyu Wang, Haoran Li, Ye Liu, Haijiao Cheng, Zhenkun Shi, Yu Wang, Meng Wang, Ping Zheng, Xiaoping Liao, Hongwu Ma, AutoESD: a web tool for automatic editing sequence design for genetic manipulation of microorganisms, Nucleic Acids Research, Volume 50, Issue W1, 5 July 2022, Pages W75–W82, https://doi.org/10.1093/nar/gkac417

234. Lukas Buecherl, Chris J Myers. (2022) "Engineering genetic circuits: advancements in genetic design automation tools and standards for synthetic biology". Current Opinion in Microbiology, Volume 68, https://doi.org/10.1016/j.mib.2022.102155

233. Mori, H., Yachie, N. A framework to efficiently describe and share reproducible DNA materials and construction protocols. Nat Commun 13, 2894 (2022). https://doi.org/10.1038/s41467-022-30588-x

232. Xiaole Yang, Kimberly A. Kowallis, W. Seth Childers. (2022) "Chapter Ten - Protein engineering strategies to stimulate the functions of bacterial pseudokinases" Editor(s): Natalia Jura, James M. Murphy. Methods in Enzymology, Academic Press, Volume 667, Pages 275-302, https://doi.org/10.1016/bs.mie.2022.03.030

231. Liu, Y., Pinto, F., Wan, X. et al. (2022). "Reprogrammed tracrRNAs enable repurposing of RNAs as crRNAs and sequence-specific RNA biosensors". Nat Commun 13, 1937. https://doi.org/10.1038/s41467-022-29604-x

230. Liu L, Wang P, Zhao D, Zhu L, Tang J, Leng W, Su J, Liu Y, Bi C, Zhang X. (2022) "Engineering Circularized mRNAs for the Production of Spider Silk Proteins". Appl Environ Microbiol. 88(8):e0002822. https://doi.org/10.1128/aem.00028-22

229. Schmidt M, Pearson AN, Incha MR, Thompson MG, Baidoo EEK, Kakumanu R, Mukhopadhyay A, Shih PM, Deutschbauer AM, Blank LM, Keasling JD. (2022) "Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing". Appl Environ Microbiol. 88(7): e0243021. https://doi.org/10.1128/aem.02430-21

228. Chao Zhang, Wei Zhao, Samuel W. Duvall, Kimberly A. Kowallis, W. Seth Childers. (2022) "Regulation of the activity of the bacterial histidine kinase PleC by the scaffolding protein PodJ". Journal of Biological Chemistry, Volume 298, Issue 4, https://doi.org/10.1016/j.jbc.2022.101683

227. Yisha Luo, Joshua S. James, Sally Jones, Andrea Martella, and Yizhi Cai. (2022) "EMMA-CAD: Design Automation for Synthetic Mammalian Constructs". ACS Synthetic Biology 11 (2), 579-586. https://doi.org/10.1021/acssynbio.1c00433

226. Madhavan, Maya and Mustafa, Sabeena. (2022) "Systems biology–the transformative approach to integrate sciences across disciplines: Systems Biology: Integrating Biological Sciences" Physical Sciences Reviews https://doi.org/10.1515/psr-2021-0102

225. Guo Jiang, Jie Wang, Dongdong Zhao, Xuxu Chen, Shiming Pu, Chunzhi Zhang, Ju Li, Yaqiu Li, Jie Yang, Siwei Li, Xiaoping Liao, Hongwu Ma, Yanhe Ma, Zuping Zhou, Changhao Bi, and Xueli Zhang (2021) "Molecular Mechanism of the Cytosine CRISPR Base Editing Process and the Roles of Translesion DNA Polymerases" ACS Synthetic Biology 10 (12), 3353-3358 https://doi.org/10.1021/acssynbio.1c00293

224. Bo Pang, Jia Li, Christopher B. Eiben, Ethan Oksen, Carolina Barcelos, Rong Chen, Elias Englund, Eric Sundstrom, Jay D. Keasling, (2021) "Lepidopteran mevalonate pathway optimization in Escherichia coli efficiently produces isoprenol analogs for next-generation biofuels". Metabolic Engineering, Volume 68, Pages 210-219, https://doi.org/10.1016/j.ymben.2021.10.007

223. Yang Yi, Mao Yufeng, Liu Ye, Wang Ruoyu, Lu Hui, Li Haoran, Luo Jiahao, Wang Meng, Liao Xiaoping, Ma Hongwu. (2021) "GEDpm-cg: Genome Editing Automated Design Platform for Point Mutation Construction in Corynebacterium glutamicum" .  Frontiers in Bioengineering and Biotechnology 9. https://www.frontiersin.org/article/10.3389/fbioe.2021.768289 

222. Yeoh J.W., Gomez-Carretero S., Chee W.K.D., Teh A.Y., Poh C.L. (2022) "Genetic Circuit Design Principles". In: Thouand G. (eds) Handbook of Cell Biosensors. Springer, Cham. https://doi.org/10.1007/978-3-030-23217-7_171

221. Gupta, D., Sharma, G., Saraswat, P. et al. (2021) "Synthetic Biology in Plants, a Boon for Coming Decades". Mol Biotechnol 63, 1138–1154. https://doi.org/10.1007/s12033-021-00386-9

220. Jie Wang, Dongdong Zhao, Ju Li, Muzi Hu, Xiuqing Xin, Marcus A. Price, Qingyan Li, Li Liu, Siwei Li, Susan J. Rosser, Chunzhi Zhang, Changhao Bi, Xueli Zhang. (2021) "Helicase-AID: A novel molecular device for base editing at random genomic loci" Metabolic Engineering, Volume 67, Pages 396-402, https://doi.org/10.1016/j.ymben.2021.08.005

219. Perry, Soffer, Jain, and Shih. (2021) "Expanding the limits towards ‘one-pot’ DNA assembly and transformation on a rapid-prototype microfluidic device". Lab on a Chip https://doi.org/10.1039/D1LC00415H

218. Savas Konur*, Laurentiu Mierla, Harold Fellermann, Christophe Ladroue, Bradley Brown, Anil Wipat, Jamie Twycross, Boyang Peter Dun, Sara Kalvala, Marian Gheorghe, and Natalio Krasnogor. (2021) "Toward Full-Stack In Silico Synthetic Biology: Integrating Model Specification, Simulation, Verification, and Biological Compilation". ACS Synth. https://doi.org/10.1021/acssynbio.1c00143

217. Benjamin M. Gyori, John A. Bachman. (2021) "From knowledge to models: automated modeling in systems and synthetic biology". Current Opinion in Systems Biology, 100362, ISSN 2452-3100, https://doi.org/10.1016/j.coisb.2021.100362

216. Justin Vrana, Orlando de Lange, Yaoyu Yang, Garrett Newman, Ayesha Saleem, Abraham Miller, Cameron Cordray, Samer Halabiya, Michelle Parks, Eriberto Lopez, Sarah Goldberg, Benjamin Keller, Devin Strickland, Eric Klavins. (2021) "Aquarium: open-source laboratory software for design, execution and data management".  Synthetic Biology, Volume 6, Issue 1, ysab006 https://doi.org/10.1093/synbio/ysab006

215. Christopher M. Whitford, Pablo Cruz-Morales, Jay D. Keasling, Tilmann Weber. (2021) "The Design-Build-Test-Learn cycle for metabolic engineering of Streptomycetes". Essays Biochem 65 (2): 261–275 https://doi.org/10.1042/EBC20200132

214. Jiefei Wang, Chao Zhang, and W. Seth Childers. (2021) "A Biosensor for Detection of Indole Metabolites". ACS Synthetic Biology 10 (7), 1605-1614 DOI: 10.1021/acssynbio.1c00090 

213. Thomas A. Dixon, Thomas C. Williams, Isak S. Pretorius. (2021) "Bioinformational trends in grape and wine biotechnology". Trends in Biotechnology. https://doi.org/10.1016/j.tibtech.2021.05.001

212. Alaster D Moffat, Adam Elliston, Nicola J Patron, Andrew W Truman, Jose A Carrasco Lopez, A biofoundry workflow for the identification of genetic determinants of microbial growth inhibition, Synthetic Biology, Volume 6, Issue 1, 2021, ysab004, https://doi.org/10.1093/synbio/ysab004

211. Wang, Y., Cheng, H., Liu, Y. et al. In-situ generation of large numbers of genetic combinations for metabolic reprogramming via CRISPR-guided base editing. Nat Commun 12, 678 (2021). https://doi.org/10.1038/s41467-021-21003-y 

210. Jianzhi Zhang, Yongcan Chen, Lihao Fu, Erpeng Guo, Bo Wang, Lei Dai, Tong Si. (2021) "Accelerating strain engineering in biofuel research via build and test automation of synthetic biology" Current Opinion in Biotechnology Volume 67, February 2021, Pages 88-98 https://doi.org/10.1016/j.copbio.2021.01.010

209. Pavan M. (2021) Setting Up an Automated Biomanufacturing Laboratory. In: Menolascina F. (eds) Synthetic Gene Circuits. Methods in Molecular Biology, vol 2229. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1032-9_5

208. Ashty S Karim, Fungmin Eric Liew, Shivani Garg, Bastian Vögeli, Blake J Rasor, Aislinn Gonnot, Marilene Pavan, Alex Juminaga, Séan D Simpson, Michael Köpke, and Michael C Jewett. (2020) "Modular cell-free expression plasmids to accelerate biological design in cells". OUP Synthetic Biology https://doi.org/10.1093/synbio/ysaa019

207. Irene Otero-Muras, Pablo Carbonell. (2020) "Automated engineering of synthetic metabolic pathways for efficient association to reaction rules.biomanufacturing". Metabolic Engineering https://doi.org/10.1016/j.ymben.2020.11.012

206. Zhongkang Li, Changhao Bi, et al. (2020) "Engineering the Calvin–Benson–Bassham cycle and hydrogen utilization pathway of Ralstonia eutropha for improved autotrophic growth and polyhydroxybutyrate production". Microbial Cell Factories doi.org/10.1186/s12934-020-01494-y

205. Stracquadanio G., Zulkower V. (2021) Computer Aided Assembly and Verification of Synthetic Chromosomes. In: Marchisio M.A. (eds) Computational Methods in Synthetic Biology. Methods in Molecular Biology, vol 2189. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0822-7_13

204. Garima Goyal, Nick Elsbree, Michael Fero, Nathan J. Hillson, and Gregory Linshiz. (2020) "Repurposing a microfluidic formulation device for automated DNA construction" PLOS One https://doi.org/10.1371/journal.pone.0242157

203. Chao Yang Zhi Li, Dongdong Zhao, Jing Chen, Xinna Zhu, Xueli Zhang, Changhao Bi. (2020) "Engineering an efficient H2 utilizing Escherichia coli platform by modulation of endogenous hydrogenases" Biochemical Engineering Journal 107851 https://doi.org/10.1016/j.bej.2020.107851

202. Mitchell G. Thompson, Matthew R. Incha, Allison N. Pearson, Matthias Schmidt, William A. Sharpless, Christopher B. Eiben, Pablo Cruz-Morales, Jacquelyn M. Blake-Hedges, Yuzhong Liu, Catharine A. Adams, Robert W. Haushalter, Rohith N. Krishna, Patrick Lichtner, Lars M. Blank, Aindrila Mukhopadhyay, Adam M. Deutschbauer, Patrick M. Shih, Jay D. Keasling. (2020) "Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing". Applied and Environmental Microbiology Oct 2020, 86 (21) e01665-20; DOI: 10.1128/AEM.01665-20

201. McLaughlin James Alastair, Beal Jacob, Mısırlı Göksel, Grünberg Raik, Bartley Bryan A., Scott-Brown James, Vaidyanathan Prashant, Fontanarrosa Pedro, Oberortner Ernst, Wipat Anil, Gorochowski Thomas E., Myers Chris J. (2020) "The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering" Frontiers in Bioengineering and Biotechnology 8, 1009. DOI 10.3389/fbioe.2020.01009

200. Maria Eugenia Inda and Timothy K. Lu. (2020). "Microbes as Biosensors". Annual Review of Microbiology 2020 74:1, 337-359. https://doi.org/10.1146/annurev-micro-022620-081059

199. Qi Gong, Bin Wang, Xubiao Lu, Jiantao Tan, Yuke Hou, Taoli Liu, Yao-Guang Liu, and Qinlong Zhu. (2020) "Nicking Endonuclease-Mediated Vector Construction Strategies for Plant Gene Functional Research" Plants 2020, 9(9), 1090; https://doi.org/10.3390/plants9091090 

198. Fero M.J., Craft J.K., Vu T., and Hillson N.J. (2020) "Combinatorial-Hierarchical DNA Library Design Using the TeselaGen DESIGN Module with j5". In: Chandran S., George K. (eds) DNA Cloning and Assembly. Methods in Molecular Biology, vol 2205. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0908-8_2

197. Ernst Oberortner, Robert Evans, Xianwei Meng, Sangeeta Nath, Hector Plahar, Lisa Simirenko, Angela Tarver, Samuel Deutsch, Nathan J. Hillson, and Jan-Fang Cheng. (2020) "An Integrated Computer-Aided Design and Manufacturing Workflow for Synthetic Biology". In: Chandran S., George K. (eds) DNA Cloning and Assembly. Methods in Molecular Biology, vol 2205. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0908-8_1

196. Machens F., Hochrein L. (2020) "The AssemblX Toolkit for Reliable and User-Friendly Multigene Assemblies". In: Chandran S., George K. (eds) DNA Cloning and Assembly. Methods in Molecular Biology, vol 2205. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0908-8_3

195. Tao Zhan, Qian Chen, Chao Zhang, Changhao Bi, and Xueli Zhang. (2020) "Constructing a novel biosynthetic pathway for the production of glycolate from glycerol in Escherichia coli" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.0c00404

194. Zhao, D., Li, J., Li, S. et al. New base editors change C to A in bacteria and C to G in mammalian cells. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0592-2

193. Li Liu, Dongdong Zhao, Lijun Ye, Tao Zhan, Bin Xiong, Muzi Hu, Changhao Bi & Xueli Zhang. (2020) "A programmable CRISPR/Cas9-based phage defense system for Escherichia coli BL21(DE3)". Microbial Cell Factories volume 19, Article number: 136. https://microbialcellfactories.biomedcentral.com/articles/10.1186/s12934-020-01393-2

192. Mitchell G. Thompson, Jacquelyn M. Blake-Hedges, Jose Henrique Pereira, John A. Hangasky, Michael S. Belcher, William M. Moore, Jesus F. Barajas, Pablo Cruz-Morales, Lorenzo J. Washington, Robert W. Haushalter, Christopher B. Eiben, Yuzhong Liu, Will Skyrud, Veronica T. Benites, Tyler P. Barnum, Edward E. K. Baidoo, Henrik V. Scheller, Michael A. Marletta, Patrick M. Shih, Paul D. Adams & Jay D. Keasling. (2020) "An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism". Nature Communications volume 11, Article number: 2931

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