Publications citing j5

Publications citing j5

217. Benjamin M. Gyori, John A. Bachman. (2021) "From knowledge to models: automated modeling in systems and synthetic biology". Current Opinion in Systems Biology, 100362, ISSN 2452-3100, https://doi.org/10.1016/j.coisb.2021.100362


216. Justin Vrana, Orlando de Lange, Yaoyu Yang, Garrett Newman, Ayesha Saleem, Abraham Miller, Cameron Cordray, Samer Halabiya, Michelle Parks, Eriberto Lopez, Sarah Goldberg, Benjamin Keller, Devin Strickland, Eric Klavins. (2021) "Aquarium: open-source laboratory software for design, execution and data management". Synthetic Biology, Volume 6, Issue 1, ysab006 https://doi.org/10.1093/synbio/ysab006


215. Christopher M. Whitford, Pablo Cruz-Morales, Jay D. Keasling, Tilmann Weber. (2021) "The Design-Build-Test-Learn cycle for metabolic engineering of Streptomycetes". Essays Biochem 65 (2): 261–275 https://doi.org/10.1042/EBC20200132


214. Jiefei Wang, Chao Zhang, and W. Seth Childers. (2021) "A Biosensor for Detection of Indole Metabolites". ACS Synthetic Biology 10 (7), 1605-1614 DOI: 10.1021/acssynbio.1c00090


213. Thomas A. Dixon, Thomas C. Williams, Isak S. Pretorius. (2021) "Bioinformational trends in grape and wine biotechnology". Trends in Biotechnology. https://doi.org/10.1016/j.tibtech.2021.05.001


212. Alaster D Moffat, Adam Elliston, Nicola J Patron, Andrew W Truman, Jose A Carrasco Lopez, A biofoundry workflow for the identification of genetic determinants of microbial growth inhibition, Synthetic Biology, Volume 6, Issue 1, 2021, ysab004, https://doi.org/10.1093/synbio/ysab004


211. Wang, Y., Cheng, H., Liu, Y. et al. In-situ generation of large numbers of genetic combinations for metabolic reprogramming via CRISPR-guided base editing. Nat Commun 12, 678 (2021). https://doi.org/10.1038/s41467-021-21003-y


210. Jianzhi Zhang, Yongcan Chen, Lihao Fu, Erpeng Guo, Bo Wang, Lei Dai, Tong Si. (2021) "Accelerating strain engineering in biofuel research via build and test automation of synthetic biology" Current Opinion in Biotechnology Volume 67, February 2021, Pages 88-98 https://doi.org/10.1016/j.copbio.2021.01.010


209. Pavan M. (2021) Setting Up an Automated Biomanufacturing Laboratory. In: Menolascina F. (eds) Synthetic Gene Circuits. Methods in Molecular Biology, vol 2229. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1032-9_5


208. Ashty S Karim, Fungmin Eric Liew, Shivani Garg, Bastian Vögeli, Blake J Rasor, Aislinn Gonnot, Marilene Pavan, Alex Juminaga, Séan D Simpson, Michael Köpke, and Michael C Jewett. (2020) "Modular cell-free expression plasmids to accelerate biological design in cells". OUP Synthetic Biology https://doi.org/10.1093/synbio/ysaa019


207. Irene Otero-Muras, Pablo Carbonell. (2020) "Automated engineering of synthetic metabolic pathways for efficient association to reaction rules.biomanufacturing". Metabolic Engineering https://doi.org/10.1016/j.ymben.2020.11.012


206. Zhongkang Li, Changhao Bi, et al. (2020) "Engineering the Calvin–Benson–Bassham cycle and hydrogen utilization pathway of Ralstonia eutropha for improved autotrophic growth and polyhydroxybutyrate production". Microbial Cell Factories doi.org/10.1186/s12934-020-01494-y


205. Stracquadanio G., Zulkower V. (2021) Computer Aided Assembly and Verification of Synthetic Chromosomes. In: Marchisio M.A. (eds) Computational Methods in Synthetic Biology. Methods in Molecular Biology, vol 2189. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0822-7_13


204. Garima Goyal, Nick Elsbree, Michael Fero, Nathan J. Hillson, and Gregory Linshiz. (2020) "Repurposing a microfluidic formulation device for automated DNA construction" PLOS One https://doi.org/10.1371/journal.pone.0242157


203. Chao Yang Zhi Li, Dongdong Zhao, Jing Chen, Xinna Zhu, Xueli Zhang, Changhao Bi. (2020) "Engineering an efficient H2 utilizing Escherichia coli platform by modulation of endogenous hydrogenases" Biochemical Engineering Journal 107851 https://doi.org/10.1016/j.bej.2020.107851


202. Mitchell G. Thompson, Matthew R. Incha, Allison N. Pearson, Matthias Schmidt, William A. Sharpless, Christopher B. Eiben, Pablo Cruz-Morales, Jacquelyn M. Blake-Hedges, Yuzhong Liu, Catharine A. Adams, Robert W. Haushalter, Rohith N. Krishna, Patrick Lichtner, Lars M. Blank, Aindrila Mukhopadhyay, Adam M. Deutschbauer, Patrick M. Shih, Jay D. Keasling. (2020) "Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing". Applied and Environmental Microbiology Oct 2020, 86 (21) e01665-20; DOI: 10.1128/AEM.01665-20


201. McLaughlin James Alastair, Beal Jacob, Mısırlı Göksel, Grünberg Raik, Bartley Bryan A., Scott-Brown James, Vaidyanathan Prashant, Fontanarrosa Pedro, Oberortner Ernst, Wipat Anil, Gorochowski Thomas E., Myers Chris J. (2020) "The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering" Frontiers in Bioengineering and Biotechnology 8, 1009. DOI 10.3389/fbioe.2020.01009


200. Maria Eugenia Inda and Timothy K. Lu. (2020). "Microbes as Biosensors". Annual Review of Microbiology 2020 74:1, 337-359. https://doi.org/10.1146/annurev-micro-022620-081059


199. Qi Gong, Bin Wang, Xubiao Lu, Jiantao Tan, Yuke Hou, Taoli Liu, Yao-Guang Liu, and Qinlong Zhu. (2020) "Nicking Endonuclease-Mediated Vector Construction Strategies for Plant Gene Functional Research" Plants 2020, 9(9), 1090; https://doi.org/10.3390/plants9091090


198. Fero M.J., Craft J.K., Vu T., and Hillson N.J. (2020) "Combinatorial-Hierarchical DNA Library Design Using the TeselaGen DESIGN Module with j5". In: Chandran S., George K. (eds) DNA Cloning and Assembly. Methods in Molecular Biology, vol 2205. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0908-8_2


197. Ernst Oberortner, Robert Evans, Xianwei Meng, Sangeeta Nath, Hector Plahar, Lisa Simirenko, Angela Tarver, Samuel Deutsch, Nathan J. Hillson, and Jan-Fang Cheng. (2020) "An Integrated Computer-Aided Design and Manufacturing Workflow for Synthetic Biology". In: Chandran S., George K. (eds) DNA Cloning and Assembly. Methods in Molecular Biology, vol 2205. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0908-8_1


196. Machens F., Hochrein L. (2020) "The AssemblX Toolkit for Reliable and User-Friendly Multigene Assemblies". In: Chandran S., George K. (eds) DNA Cloning and Assembly. Methods in Molecular Biology, vol 2205. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0908-8_3


195. Tao Zhan, Qian Chen, Chao Zhang, Changhao Bi, and Xueli Zhang. (2020) "Constructing a novel biosynthetic pathway for the production of glycolate from glycerol in Escherichia coli" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.0c00404


194. Zhao, D., Li, J., Li, S. et al. New base editors change C to A in bacteria and C to G in mammalian cells. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0592-2


193. Li Liu, Dongdong Zhao, Lijun Ye, Tao Zhan, Bin Xiong, Muzi Hu, Changhao Bi & Xueli Zhang. (2020) "A programmable CRISPR/Cas9-based phage defense system for Escherichia coli BL21(DE3)". Microbial Cell Factories volume 19, Article number: 136. https://microbialcellfactories.biomedcentral.com/articles/10.1186/s12934-020-01393-2


192. Mitchell G. Thompson, Jacquelyn M. Blake-Hedges, Jose Henrique Pereira, John A. Hangasky, Michael S. Belcher, William M. Moore, Jesus F. Barajas, Pablo Cruz-Morales, Lorenzo J. Washington, Robert W. Haushalter, Christopher B. Eiben, Yuzhong Liu, Will Skyrud, Veronica T. Benites, Tyler P. Barnum, Edward E. K. Baidoo, Henrik V. Scheller, Michael A. Marletta, Patrick M. Shih, Paul D. Adams & Jay D. Keasling. (2020) "An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism". Nature Communications volume 11, Article number: 2931


191. Hu, M., Xiong, B., Li, Z. et al. A novel gene expression system for Ralstonia eutropha based on the T7 promoter. BMC Microbiol 20, 121 (2020). https://doi.org/10.1186/s12866-020-01812-9


190. Mee‐Rye Park, Yan Chen, Mitchell Thompson, Veronica T. Benites, Bonnie Fong, Christopher J. Petzold, Edward E. K. Baidoo, John M. Gladden, Paul D. Adams, Jay D. Keasling, Blake A. Simmons, and Steven W. Singer. (2020) "Response of Pseudomonas putida to Complex, Aromatic‐Rich Fractions from Biomass" ChemSusChem https://doi.org/10.1002/cssc.202000268


189. Nicola J. Patron. O(2020) "Beyond natural: synthetic expansions of botanical form and function" New Phytologist. https://doi.org/10.1111/nph.16562


188. Changhao Bi, Bin Xiong, Muzi Hu, Zhongkang Li, Li Liu, Siwei Li, Chunzhi Zhang, Xueli Zhang. (2020) "A novel gene expression system for Ralstonia eutropha based on the T7 promoter", Applied & Industrial Microbiology - General Microbiology DOI:10.21203/rs.2.21274/v1


187. Joshua J. Timmons, Doug Densmore. (2020) "Repository-based plasmid design". PLOS https://doi.org/10.1371/journal.pone.0223935


186. Matthew R. Incha, Mitchell G. Thompson, Jacquelyn M.Blake-Hedges, Yuzhong Liu, Allison N. Pearson, Matthias Schmidt, Jennifer W. Gin, Christopher J. Petzold, Adam M. Deutschbauer, Jay D. Keasling. (2019) "Leveraging host metabolism for bisdemethoxycurcumin production in Pseudomonas putida" Metabolic Engineering Communications e00119 https://doi.org/10.1016/j.mec.2019.e00119


185 . Mitchell G Thompson, Allison N. Pearson, Jesus F. Barajas, Pablo Cruz-Morales, Nima Sedaghatian, Zak Costello, Megan E. Garber, Matthew R. Incha, Luis E. Valencia, Edward E.K. Baidoo, Hector Garcia Martin, Aindrila Mukhopadhyay, and Jay D Keasling. 2019 "Identification, characterization, and application of a highly sensitive lactam biosensor from Pseudomonas putida" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.9b00292


184. Paul R. Jaschke, Gabrielle A. Dotson, Kay S. Hung, Diane Liu, and Drew Endy. (2019) "Definitive demonstration by synthesis of genome annotation completeness" PNAS 116 (48) 24206-24213 https://doi.org/10.1073/pnas.1905990116


183. Jonathan A. Goler, James M. Carothers, and Jay D. Keasling. (2014) "Dual-Selection for Evolution of In Vivo Functional Aptazymes as Riboswitch Parts" Artificial Riboswitches pp 221-235


182. Mitchell G. Thompson, Luis E. Valencia, Jacquelyn M. Blake-Hedges, Pablo Cruz-Morales, Alexandria E. Velasquez, Allison N. Pearson, Lauren N. Sermeno, William A. Sharpless, Veronica T. Benites, Yan Chen, Edward E.K. Baidoo, Christopher J. Petzold, Adam M. Deutschbauer, Jay D. Keasling. (2019) "Omics-driven identification and elimination of valerolactam catabolism in Pseudomonas putida KT2440 for increased product titer" Metabolic Engineering Communications, Volume 9, e00098 https://doi.org/10.1016/j.mec.2019.e00098


181. Fusun Yaman, Aaron Adler, and Jacob Beal. (2019) "Opportunities and Challenges in Applying Artificial Intelligence to Bioengineering" Automated Reasoning for Systems Biology and Medicine pp 425-452


180. Christophe Ladroue and Sara Kalvala. (2015) "Constraint-Based Genetic Compilation" International Conference on Algorithms for Computational Biology. AlCoB 2015: Algorithms for Computational Biology pp 25-38


179. Emily Scher, Shay B Cohen, Guido Sanguinetti. (2019) "PartCrafter: find, generate and analyze BioParts" Synthetic Biology, Volume 4, Issue 1 https://doi.org/10.1093/synbio/ysz014


178. Karthik Sekar, Roberto Rusconi, John T Sauls, Tobias Fuhrer, Elad Noor, Jen Nguyen, Vicente I Fernandez, Marieke F Buffing, Michael Berney, Suckjoon Jun, Roman Stocker, Uwe Sauer. (2018) "Synthesis and degradation of FtsZ quantitatively predict the first cell division in starved bacteria" Mol Syst Biol 14:e8623 https://doi.org/10.15252/msb.20188623


177. Jesus F. Barajas, Ryan P. McAndrew, Mitchell G. Thompson, Tyler W. H. Backman, Bo Pang, Tristan de Rond, Jose H. Pereira, Veronica T. Benites, Héctor García Martín, Edward E. K. Baidoo, Nathan J. Hillson, Paul D. Adams, Jay D. Keasling. (2019) "Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases" Journal of Industrial Microbiology & Biotechnology Volume 46, Issue 8, pp 1225–1235


176. Yang Liu, Xinyi Wan & Baojun Wang. (2019) "Engineered CRISPRa enables programmable eukaryote-like gene activation in bacteria" Nature Communications volume 10, Article number: 3693


175. Chris J. Myers, Jacob Beal, Thomas E. Gorochowski, Hiroyuki Kuwahara, Curtis Madsen, James Alastair McLaughlin, Göksel Mısırlı, Tramy Nguyen, Ernst Oberortner, Meher Samineni, Anil Wipat, Michael Zhang, Zach Zundel. (2017) "A standard-enabled workflow for synthetic biology" Biochem Soc Trans (2017) 45 (3): 793-803. https://doi.org/10.1042/BST20160347


174. Weninger A., Killinger M., Vogl T. (2016) "Key Methods for Synthetic Biology: Genome Engineering and DNA Assembly". In: Glieder A., Kubicek C., Mattanovich D., Wiltschi B., Sauer M. (eds) Synthetic Biology. Springer, Cham https://doi.org/10.1007/978-3-319-22708-5_3


173. Chris J. Myers. (2015) "Computational Synthetic Biology: Progress and the Road Ahead" IEEE Transactions on Multi-Scale Computing Systems ( Volume: 1 , Issue: 1 , Page(s): 19 - 32 ) DOI: 10.1109/TMSCS.2015.2478442


172. Zaiqiang Wu, Dongdong Zhao, Siwei Li, Junsong Wang, Changhao Bi, Xueli Zhang. (2019) "Combinatorial modulation of initial codons for improved zeaxanthin synthetic pathway efficiency in Escherichia coli" Microbiology https://doi.org/10.1002/mbo3.930


171. Ross Kent, Neil Dixon. (2019) "Contemporary Tools for Regulating Gene Expression in Bacteria" Trends in Biotechnology https://doi.org/10.1016/j.tibtech.2019.09.007


170. Jing Wui Yeoh, Salvador Gomez-Carretero, Wai Kit David Chee, Ai Ying Teh, Chueh Loo Poh. (2019) "Genetic Circuit Design Principles" Handbook of Cell Biosensors pp 1-44


169. Celia Payen, Dawn Thompson. (2019) "The renaissance of yeasts as microbial factories in the modern age of biomanufacturing" YEAST EXTRACTS https://doi.org/10.1002/yea.3439


168. Xiuqing Xin, Ju Li, Dongdong Zhao, Siwei Li, Qianwen Xie, Zhongkang Li, Feiyu Fan, Changhao Bi, Xueli Zhang. (2019) "Double-Check Base Editing for Efficient A to G Conversions" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.9b00284


167. Shuwen Liu, Haihan Xiao, Fangfang Zhang, Zheng Lu, Yun Zhang, Aihua Deng, Zhongcai Li, Cui Yang & Tingyi Wen. (2019) "A seamless and iterative DNA assembly method named PS-Brick and its assisted metabolic engineering for threonine and 1-propanol production". Biotechnology for Biofuelsvolume 12, Article number: 180 https://biotechnologyforbiofuels.biomedcentral.com/articles/10.1186/s13068-019-1520-x


166. Wen Wang, Ping He, Dongdong Zhao, Lijun Ye, Longhai Dai, Xueli Zhang, Yuanxia Sun, Jing Zheng, and Changhao Bi. (2019) "Construction of Escherichia coli cell factories for crocin biosynthesis" Microbial Cell Factories 18:120 https://doi.org/10.1186/s12934-019-1166-1


165. Fu Chen Le Yuan Shaozhen Ding Yu Tian Qian-Nan Hu. (2019) "Data-driven rational biosynthesis design: from molecules to cell factories". Briefings in Bioinformatics, bbz065, https://doi.org/10.1093/bib/bbz065


164. Jesus F. Barajas, Ryan P. McAndrew, Mitchell G. Thompson, Tyler W. H. Backman, Bo Pang, Tristan de Rond, Jose H. Pereira, Veronica T. Benites, Héctor García Martín, Edward E. K. Baidoo, Nathan J. Hillson, Paul D. Adams, and Jay D. Keasling. (2019) "Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases" J Ind Microbiol Biotechnol https://doi.org/10.1007/s10295-019-02189-z


163. Xu P., Koffas M.A.G. (2013) Assembly of Multi-gene Pathways and Combinatorial Pathway Libraries Through ePathBrick Vectors. In: Polizzi K., Kontoravdi C. (eds) Synthetic Biology. Methods in Molecular Biology (Methods and Protocols), vol 1073. Humana Press, Totowa, NJ https://doi.org/10.1007/978-1-62703-625-2_10


162. Mitchell G. Thompson, Jacquelyn M. Blake-Hedges, Pablo Cruz-Morales, Jesus F. Barajas, Samuel C. Curran, Christopher B. Eiben, Nicholas C. Harris, Veronica T. Benites, Jennifer W. Gin, William A. Sharpless, Frederick F. Twigg, Will Skyrud, Rohith N. Krishna, Jose Henrique Pereira, Edward E. K. Baidoo, Christopher J. Petzold, Paul D. Adams, Adam P. Arkin, Adam M. Deutschbauer, Jay D. Keasling. (2019) "Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism". mBio May 2019, 10 (3) e02577-18; DOI: 10.1128/mBio.02577-18


161. Wu, Li, Ye, Zhao, Fan, Li, Bhang, Bi, and Zhang. (2019) "Engineering an Artificial Membrane Vesicle Trafficking System (AMVTS) for the Excretion of β-Carotene in Escherichia coli". ACS Synth. Biol., DOI: 10.1021/acssynbio.8b00472


160. Jorge Gonzalez de la Cruz, Fabian Machens, Katrin Messerschmidt, and Arren Bar-Even. (2019) "Core catalysis of the reductive glycine pathway demonstrated in yeast". ACS Synth. Biol., DOI: 10.1021/acssynbio.8b00464


159. Tao Wu, Siwei Li, Lijun Ye, Dongdong Zhao, Feiyu Fan, Qinyan Li, Bolin Zhang, Changhao Bi, and Xueli Zhang. (2019) "Engineering an artificial membrane vesicle trafficking system (AMVTS) for the excretion of β-carotene in Escherichia coli". ACS Synth. Biol., DOI: 10.1021/acssynbio.8b00472


158. Naveen Venayak, Kaushik Raj, Radhakrishnan Mahadevan. (2019) "Impact framework: A python framework for writing data analysis workflows to interpretmicrobial physiology". Metabolic Engineering Communications https://doi.org/10.1016/j.mec.2019.e00089


157. Zaiqiang Wu, Junsong Wang, Xueli Zhang, Changhao Bi. (2019) "Engineering an electroactive Escherichia coli for the microbial electrosynthesis of succinate by increasing the intracellular FAD pool". Biochemical Engineering Journal. https://doi.org/10.1016/j.bej.2019.03.015


156. Li Z, Xiong B, Liu L, Li S, Xin X, Li Z, Zhang X, Bi C. (2019) "Development of an autotrophic fermentation technique for the production of fatty acids using an engineered Ralstonia eutropha cell factory". J Ind Microbiol Biotechnol. doi: 10.1007/s10295-019-02156-8


155. David I. Walsh, III, Marilene Pavan, Luis Ortiz, Scott Wick, Johanna Bobrow, Nicholas J. Guido, Sarah Leinicke, Dany Fu, Shreya Pandit, Lucy Qin, Peter A. Carr, Douglas Densmore. (2019) "Standardizing Automated DNA Assembly: Best Practices, Metrics, and Protocols Using Robots" SLAS Technology. https://doi.org/10.1177/2472630318825335


154. Zaiqiang Wu, Junsong Wang, Jun Liu, Yan Wang, Changhao Bi and Xueli Zhang. (2019) "Engineering an electroactive Escherichia coli for the microbial electrosynthesis of succinate from glucose and CO2". Microbial Cell Factories 18:15 https://doi.org/10.1186/s12934-019-1067-3


153. Anuj Dwivedi, Kamal Kumar, and Praveen Kumar Verma. (2019) "Chapter 4 - Constructing Synthetic Pathways in Plants: Strategies and Tools" in Current Developments in Biotechnology and Bioengineering Synthetic Biology (Cell Engineering and Bioprocessing Technologies), Pages 77-113 https://doi.org/10.1016/B978-0-444-64085-7.00004-6


152. R. Clay Wright, Jennifer Nemhauser. (2019) "Plant Synthetic Biology: Quantifying the Known Unknowns and Discovering the Unknown Unknowns". Plant Physiology. DOI: https://doi.org/10.1104/pp.18.01222


151. David G. J. Mann, Scott A. Bevan, Anthony J. Harvey, Rachelle A. Leffert-Sorenson. (2018) "The Use of an Automated Platform to Assemble Multigenic Constructs for Plant Transformation" Transgenic Plants pp 19-35


150. Garima Goyal, Zak Costello, Jorge Alonso Guitierrez, Aram Kang, Taek Soon Lee, Hector Garcia Martin, and Nathan J Hillson. (2018) "Parallel Integration and Chromosomal Expansion of Metabolic Pathways" ACS Synthetic Biology DOI: 10.1021/acssynbio.8b00243


149. Lijun Ye, Xinna Zhu, Tao Wu, Wen Wang, Dongdong Zhao, Changhao Bi and Xueli Zhang. (2018) "Optimizing the localization of astaxanthin enzymes for improved productivity". Biotechnology for Biofuels201811:278 https://doi.org/10.1186/s13068-018-1270-1


148. Victor Chubukov, Florence Mingardon, Wendy Schackwitz, Edward E. K. Baidoo, Jorge Alonso-Gutierrez, Qijun Hu, Taek Soon Lee, Jay D. Keasling, Aindrila Mukhopadhyay. (2015) "Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC". Appl. Environ. Microbiol. 81 (14) 4690-4696; DOI: 10.1128/AEM.01102-15


147. Thomas L. Ruegg, Jose H. Pereira, Joseph C. Chen, Andy DeGiovanni, Pavel Novichkov, Vivek K. Mutalik, Giovani P. Tomaleri, Steven W. Singer, Nathan J. Hillson, Blake A. Simmons, Paul D. Adams & Michael P. Thelen. (2018) "Jungle Express is a versatile repressor system for tight transcriptional control". Nature Communications 9, 3617. https://doi.org/10.1038/s41467-018-05857-3


146. Thomas H. Mann and Lucy Shapiro. (2018) "Integration of cell cycle signals by multi-PAS domain kinases". PNAS 201808543 https://doi.org/10.1073/pnas.1808543115


145. Xu Feng, Dongdong Zhao, Xueli Zhang, Xiang Ding, and Changhao Bi. (2018) "CRISPR/Cas9 Assisted Multiplex Genome Editing Technique in Escherichia coli". Biotechnology Journal https://doi.org/10.1002/biot.201700604


144. Bin Xiong, Zhongkang Li, Li Liu, Dongdong Zhao, Xueli Zhang and Changhao Bi. (2018) "Genome editing of Ralstonia eutropha using an electroporation-based CRISPR-Cas9 technique" Biotechnology for Biofuels 11:172 https://doi.org/10.1186/s13068-018-1170-4


143. Guo JY, Hu KL, Bi CH, Li QY, Zhang XL. (2018) "Construction of an alternative glycerol-utilization pathway for improved β-carotene production in Escherichia coli". J Ind Microbiol Biotechnol. doi: 10.1007/s10295-018-2045-1.


142. Erik K.R. Hanko, Charles M. Denby, Violeta Sànchez i Nogué, Weiyin Lin, Kelsey J. Ramirez, Christine A. Singer, Gregg T. Beckham, Jay D. Keasling.(2018) "Engineering β-oxidation in Yarrowia lipolytica for methyl ketone production". Metabolic Engineering https://doi.org/10.1016/j.ymben.2018.05.018


141. Wu, T., Ye, L., Zhao, D. et al. (2018) "Engineering membrane morphology and manipulating synthesis for increased lycopene accumulation in Escherichia coli cell factories" 3 Biotech 8: 269. https://doi.org/10.1007/s13205-018-1298-8


140. Jimmy Mevaere, Christophe Goulard, Olha Schneider, Olga N. Sekurova, Haiyan Ma, Séverine Zirah, Carlos Afonso, Sylvie Rebuffat, Sergey B. Zotchev & Yanyan Li. (2018) "An orthogonal system for heterologous expression of actinobacterial lasso peptides in Streptomyces hosts". Scientific Reports doi:10.1038/s41598-018-26620-0


139. Guo JY, Hu KL, Bi CH, Li QY, Zhang XL. (2018) "Construction of an alternative glycerol-utilization pathway for improved β-carotene production in Escherichia

coli". J Ind Microbiol Biotechnol. doi: 10.1007/s10295-018-2045-1. PubMed PMID: 29752566.


138. Dawn T. Eriksen, Ran Chao, Huimin Zhao. (2018) "Applying Advanced DNA Assembly Methods to Generate Pathway Libraries", in Synthetic Biology: Parts, Devices and Applications, 1. https://doi.org/10.1002/9783527688104.ch16


137. Arturo Casini, Fang-Yuan Chang, Raissa Eluere, Andrew M. King, Eric M. Young, Quentin M. Dudley, Ashty Karim, Katelin Pratt, Cassandra Bristol, Anthony Forget, Amar Ghodasara, Robert Warden-Rothman, Rui Gan, Alexander Cristofaro, Amin Espah Borujeni, Min-Hyung Ryu, Jian Li, Yong-Chan Kwon, He Wang, Evangelos Tatsis, Carlos Rodriguez-Lopez, Sarah O’Connor, Marnix H. Mdema, Michael A. Fischbach, Michael C. Jewett, Christopher Voigt, and D. Benjamin Gordon. (2018) "A Pressure Test to Make 10 Molecules in 90 Days: External Evaluation of Methods to Engineer Biology". Journal of the American Chemical Society Article ASAP DOI: 10.1021/jacs.7b13292


136. Coates, R.C., Bowen, B.P., Oberortner, E. et al. (2018) "An integrated workflow for phenazine-modifying enzyme characterization". J Ind Microbiol Biotechnol. https://doi.org/10.1007/s10295-018-2025-5


135. Ellis Whitehead, Fabian Rudolf, Hans-Michael Kaltenbach, and Jörg Stelling. (2018) "Automated Planning Enables Complex Protocols on Liquid-Handling Robots". ACS Synth. Biol., Article ASAP DOI: 10.1021/acssynbio.8b00021


134. Charles M. Denby, Rachel A. Li, Van T. Vu, Zak Costello, Weiyin Lin, Leanne Jade G. Chan, Joseph Williams, Bryan Donaldson, Charles W. Bamforth, Christopher J. Petzold, Henrik V. Scheller, Hector Garcia Martin & Jay D. Keasling. (2018) "Industrial brewing yeast engineered for the production of primary flavor determinants in hopped beer". Nature Communications volume 9, Article number: 965. doi:10.1038/s41467-018-03293-x


133. Esteban Marcellin and Lars Keld Nielsen. (2018) "Advances in analytical tools for high throughput strain engineering". Current Opinion in Biotechnology, Volume 54, Pages 33–40. https://doi.org/10.1016/j.copbio.2018.01.027


132. Mitchell G. Thompson, Nima Sedaghatian, Jesus F. Barajas, Maren Wehrs, Constance B. Bailey, Nurgul Kaplan, Nathan J. Hillson, Aindrila Mukhopadhyay & Jay D. Keasling. (2018) "Isolation and characterization of novel mutations in the pSC101 origin that increase copy number". Scientific Reports 8, 1590 doi:10.1038/s41598-018-20016-w


131. Dossani ZY, Reider Apel A, Szmidt-Middleton H, Hillson NJ, Deutsch S, Keasling JD, and Mukhopadhyay A. (2017). A combinatorial approach to synthetic transcription factor-promoter combinations for yeast strain engineering. Yeast 1–8. doi:10.1002/yea.3292


130. Dongdong Zhao, Xu Feng, Xinna Zhu, Tao Wu, Xueli Zhang & Changhao Bi. (2017) "CRISPR/Cas9-assisted gRNA-free one-step genome editing with no sequence limitations and improved targeting efficiency". Scientific Reports 7, Article number: 16624 doi:10.1038/s41598-017-16998-8


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