Publications citing j5
Publications citing j5
258. Christoph Wagner, Uriel Urquiza-Garcia, Matias D. Zurbriggen, Hannes M. Beyer. (2024) "GMOCU: Digital Documentation, Management, and Biological Risk Assessment of Genetic Parts". Advanced Biology https://doi.org/10.1002/adbi.202300529
257. Allison N. Pearson, Matthew R. Incha, Cindy N. Ho, Matthias Schmidt, Jacob B. Roberts, Alberto A. Nava, and Jay D. Keasling. (2023) "Characterization and Diversification of AraC/XylS Family Regulators Guided by Transposon Sequencing" ACS Synthetic Biology https://pubs.acs.org/doi/10.1021/acssynbio.3c00441
256. Alberto A. Nava, Anna Lisa Fear, Namil Lee, Peter Mellinger, Guangxu Lan, Joshua McCauley, Stephen Tan, Nurgul Kaplan, Garima Goyal, R. Cameron Coates, Jacob Roberts, Zahmiria Johnson, Romina Hu, Bryan Wu, Jared Ahn, Woojoo E. Kim, Yao Wan, Kevin Yin, Nathan Hillson, Robert W. Haushalter, and Jay D. Keasling. (2023) "Automated Platform for the Plasmid Construction Process" ACS Synthetic Biology 2023 12 (12), 3506-3513 https://pubs.acs.org/doi/10.1021/acssynbio.3c00292
255. Ataii N, Bakshi S, Chen Y, Fernandez M, Shao Z, et al. (2023) "Enabling AI in synthetic biology through Construction File specification". PLOS ONE 18(11): e0294469. https://doi.org/10.1371/journal.pone.0294469
254. Hou, Zhiyang, Zelin Xu, Mengying Wu, Liqiu Ma, Li Sui, Po Bian, and Ting Wang. 2023. "Enhancement of Repeat-Mediated Deletion Rearrangement Induced by Particle Irradiation in a RecA-Dependent Manner in Escherichia coli" Biology 12, no. 11: 1406. https://doi.org/10.3390/biology12111406
253. Chunlin Tan, Ping Xu, Fei Tao. (2022) "Harnessing Interactional Sensory Genes for Rationally Reprogramming Chaotic Metabolism". Research. https://doi.org/10.34133/research.0017
252. Zhandong Wei, Dongdong Zhao, Jie Wang, Ju Li, Ning Xu, Chao Ding, Jun Liu, Siwei Li, Chunzhi Zhang zhangcz@dlpu.edu.cn, Changhao Bi. (2023) "Targeted C-to-T and A-to-G dual mutagenesis system for RhtA transporter in vivo evolution" Genetics and Molecular Biology DOI: https://doi.org/10.1128/aem.00752-23
251. Mansoor A. Siddiqui, Ashima Sharma, Syed Shams Yazdani, "Chapter 6 - Design, building, and challenges in synthetic genomics", Editor(s): Vijai Singh, New Frontiers and Applications of Synthetic Biology, Academic Press, 2022, Pages 67-82 https://doi.org/10.1016/B978-0-12-824469-2.00002-6
250. Matthias Schmidt, Namil Lee, Chunjun Zhan, Jacob B. Roberts, Alberto A. Nava, Leah S. Keiser, Aaron A. Vilchez, Yan Chen, Christopher J. Petzold, Robert W. Haushalter, Lars M. Blank, and Jay D. Keasling. (2023) "Maximizing Heterologous Expression of Engineered Type I Polyketide Synthases: Investigating Codon Optimization Strategies" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.3c00367
249. Yang Liu, Haijiao Cheng, Haoni Li, Yingzhe Zhang, Meng Wang. (2023) "A Programmable CRISPR/Cas9 Toolkit Improves Lycopene Production in Bacillus subtilis" Applied and Industrial Microbiology DOI: https://doi.org/10.1128/aem.00230-23
248. Wang, B. et al. (2023). Synthetic Biology: Technical Issues. In: Ning, K., Zhan, Y. (eds) Synthetic Biology and iGEM: Techniques, Development and Safety Concerns. Springer, Singapore. https://doi.org/10.1007/978-981-99-2460-8_4
247. Wang, P., Zhao, D., Li, J., Su, J., Zhang, C., Li, S., Fan, F., Dai, Z., Liao, X., Mao, Z., Bi, C., Zhang, X., Artificial Diploid Escherichia coli by a CRISPR Chromosome-Doubling Technique. Adv. Sci. 2023, 10, 2205855. https://doi.org/10.1002/advs.202205855
246. John A Bryant, Mason Kellinger, Cameron Longmire, Ryan Miller, R Clay Wright, AssemblyTron: flexible automation of DNA assembly with Opentrons OT-2 lab robots, Synthetic Biology, Volume 8, Issue 1, 2023, ysac032, https://doi.org/10.1093/synbio/ysac032
245. S. R. Little, J. M. Perry, K. Samlali, and S. C. C. Shih, in Droplet Microfluidics, ed. C. Ren and A. Lee, The Royal Society of Chemistry, 2020, pp. 193-222. https://doi.org/10.1039/9781839162855-00193
244. Patel, D. (2023). Exploring the Frontiers of Microfluidics: Challenges and Future Prospects. In R. Singh, R. Phanden, B. Sikarwar, & J. Davim (Eds.), Advances in MEMS and Microfluidic Systems (pp. 11-31). IGI Global. https://doi.org/10.4018/978-1-6684-6952-1.ch002 https://www.igi-global.com/gateway/chapter/324986
243. Tien T. Sword, J. William Barker, Madeline Spradley, Yan Chen, Christopher J. Petzold, Constance B. Bailey. (2023) "Expression of blue pigment synthetase a from Streptomyces lavenduale reveals insights on the effects of refactoring biosynthetic megasynthases for heterologous expression in Escherichia coli", Protein Expression and Purification, Volume 210, 106317, ISSN 1046-5928, https://doi.org/10.1016/j.pep.2023.106317 https://www.sciencedirect.com/science/article/pii/S1046592823000888
242. Xue Zhao, Mahbubur Rahman, Zhiyuan Xu, Tom Kasputis, Yawen He, Lijuan Yuan, R. Clay Wright, and Juhong Chen. "Engineered Yeast Displaying Specific Norovirus-Binding Nanobodies for the Concentration and Detection of Human Norovirus in Food Matrix". Journal of Agricultural and Food Chemistry Article ASAP DOI: 10.1021/acs.jafc.3c01946 https://pubs.acs.org/doi/10.1021/acs.jafc.3c01946
241. Pearson AN, Thompson MG, Kirkpatrick LD, Ho C, Vuu KM, Waldburger LM, Keasling JD, Shih PM. The pGinger Family of Expression Plasmids. Microbiol Spectr. 2023 May 22:e0037323. doi: 10.1128/spectrum.00373-23 https://journals.asm.org/doi/10.1128/spectrum.00373-23
240. John A Bryant Jr, Mason Kellinger, Cameron Longmire, Ryan Miller, R Clay Wright. (2022) "AssemblyTron: Flexible automation of DNA assembly with Opentrons OT-2 lab robots" OUP Synthetic Biology, https://doi.org/10.1093/synbio/ysac032
239. Li Liu, Wenbo Li, Ju Li, Dongdong Zhao, Siwei Li, Guo Jiang, Jie Wang, Xuxu Chen, Changhao Bi*, and Xueli Zhang. (2022) "Circular Guide RNA for Improved Stability and CRISPR-Cas9 Editing Efficiency in Vitro and in Bacteria" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.2c00381
238. Su, J., Wang, P., Li, J. et al. A CRISPR-based chromosomal-separation technique for Escherichia coli. Microb Cell Fact 21, 235 (2022). https://doi.org/10.1186/s12934-022-01957-4 https://microbialcellfactories.biomedcentral.com/articles/10.1186/s12934-022-01957-4
237. Xiaole Yang, Kimberly A. Kowallis, W. Seth Childers, Chapter Ten - Protein engineering strategies to stimulate the functions of bacterial pseudokinases, Editor(s): Natalia Jura, James M. Murphy, Methods in Enzymology, Academic Press, Volume 667, 2022, Pages 275-302, https://doi.org/10.1016/bs.mie.2022.03.030 https://www.sciencedirect.com/science/article/pii/S0076687922001215
236. Garber, M.E., Fregoso, R., Lake, J. et al. Pseudomonas response regulators produced in an E. coli heterologous expression host exhibit host-derived post-translational phosphorylation. Sci Rep 12, 10336 (2022). https://doi.org/10.1038/s41598-022-13525-2
235. Yi Yang, Yufeng Mao, Ruoyu Wang, Haoran Li, Ye Liu, Haijiao Cheng, Zhenkun Shi, Yu Wang, Meng Wang, Ping Zheng, Xiaoping Liao, Hongwu Ma, AutoESD: a web tool for automatic editing sequence design for genetic manipulation of microorganisms, Nucleic Acids Research, Volume 50, Issue W1, 5 July 2022, Pages W75–W82, https://doi.org/10.1093/nar/gkac417
234. Lukas Buecherl, Chris J Myers. (2022) "Engineering genetic circuits: advancements in genetic design automation tools and standards for synthetic biology". Current Opinion in Microbiology, Volume 68, https://doi.org/10.1016/j.mib.2022.102155
233. Mori, H., Yachie, N. A framework to efficiently describe and share reproducible DNA materials and construction protocols. Nat Commun 13, 2894 (2022). https://doi.org/10.1038/s41467-022-30588-x
232. Xiaole Yang, Kimberly A. Kowallis, W. Seth Childers. (2022) "Chapter Ten - Protein engineering strategies to stimulate the functions of bacterial pseudokinases" Editor(s): Natalia Jura, James M. Murphy. Methods in Enzymology, Academic Press, Volume 667, Pages 275-302, https://doi.org/10.1016/bs.mie.2022.03.030
231. Liu, Y., Pinto, F., Wan, X. et al. (2022). "Reprogrammed tracrRNAs enable repurposing of RNAs as crRNAs and sequence-specific RNA biosensors". Nat Commun 13, 1937. https://doi.org/10.1038/s41467-022-29604-x
230. Liu L, Wang P, Zhao D, Zhu L, Tang J, Leng W, Su J, Liu Y, Bi C, Zhang X. (2022) "Engineering Circularized mRNAs for the Production of Spider Silk Proteins". Appl Environ Microbiol. 88(8):e0002822. https://doi.org/10.1128/aem.00028-22
229. Schmidt M, Pearson AN, Incha MR, Thompson MG, Baidoo EEK, Kakumanu R, Mukhopadhyay A, Shih PM, Deutschbauer AM, Blank LM, Keasling JD. (2022) "Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing". Appl Environ Microbiol. 88(7): e0243021. https://doi.org/10.1128/aem.02430-21
228. Chao Zhang, Wei Zhao, Samuel W. Duvall, Kimberly A. Kowallis, W. Seth Childers. (2022) "Regulation of the activity of the bacterial histidine kinase PleC by the scaffolding protein PodJ". Journal of Biological Chemistry, Volume 298, Issue 4, https://doi.org/10.1016/j.jbc.2022.101683
227. Yisha Luo, Joshua S. James, Sally Jones, Andrea Martella, and Yizhi Cai. (2022) "EMMA-CAD: Design Automation for Synthetic Mammalian Constructs". ACS Synthetic Biology 11 (2), 579-586. https://doi.org/10.1021/acssynbio.1c00433
226. Madhavan, Maya and Mustafa, Sabeena. (2022) "Systems biology–the transformative approach to integrate sciences across disciplines: Systems Biology: Integrating Biological Sciences" Physical Sciences Reviews https://doi.org/10.1515/psr-2021-0102
225. Guo Jiang, Jie Wang, Dongdong Zhao, Xuxu Chen, Shiming Pu, Chunzhi Zhang, Ju Li, Yaqiu Li, Jie Yang, Siwei Li, Xiaoping Liao, Hongwu Ma, Yanhe Ma, Zuping Zhou, Changhao Bi, and Xueli Zhang (2021) "Molecular Mechanism of the Cytosine CRISPR Base Editing Process and the Roles of Translesion DNA Polymerases" ACS Synthetic Biology 10 (12), 3353-3358 https://doi.org/10.1021/acssynbio.1c00293
224. Bo Pang, Jia Li, Christopher B. Eiben, Ethan Oksen, Carolina Barcelos, Rong Chen, Elias Englund, Eric Sundstrom, Jay D. Keasling, (2021) "Lepidopteran mevalonate pathway optimization in Escherichia coli efficiently produces isoprenol analogs for next-generation biofuels". Metabolic Engineering, Volume 68, Pages 210-219, https://doi.org/10.1016/j.ymben.2021.10.007
223. Yang Yi, Mao Yufeng, Liu Ye, Wang Ruoyu, Lu Hui, Li Haoran, Luo Jiahao, Wang Meng, Liao Xiaoping, Ma Hongwu. (2021) "GEDpm-cg: Genome Editing Automated Design Platform for Point Mutation Construction in Corynebacterium glutamicum" . Frontiers in Bioengineering and Biotechnology 9. https://www.frontiersin.org/article/10.3389/fbioe.2021.768289
222. Yeoh J.W., Gomez-Carretero S., Chee W.K.D., Teh A.Y., Poh C.L. (2022) "Genetic Circuit Design Principles". In: Thouand G. (eds) Handbook of Cell Biosensors. Springer, Cham. https://doi.org/10.1007/978-3-030-23217-7_171
221. Gupta, D., Sharma, G., Saraswat, P. et al. (2021) "Synthetic Biology in Plants, a Boon for Coming Decades". Mol Biotechnol 63, 1138–1154. https://doi.org/10.1007/s12033-021-00386-9
220. Jie Wang, Dongdong Zhao, Ju Li, Muzi Hu, Xiuqing Xin, Marcus A. Price, Qingyan Li, Li Liu, Siwei Li, Susan J. Rosser, Chunzhi Zhang, Changhao Bi, Xueli Zhang. (2021) "Helicase-AID: A novel molecular device for base editing at random genomic loci" Metabolic Engineering, Volume 67, Pages 396-402, https://doi.org/10.1016/j.ymben.2021.08.005
219. Perry, Soffer, Jain, and Shih. (2021) "Expanding the limits towards ‘one-pot’ DNA assembly and transformation on a rapid-prototype microfluidic device". Lab on a Chip https://doi.org/10.1039/D1LC00415H
218. Savas Konur*, Laurentiu Mierla, Harold Fellermann, Christophe Ladroue, Bradley Brown, Anil Wipat, Jamie Twycross, Boyang Peter Dun, Sara Kalvala, Marian Gheorghe, and Natalio Krasnogor. (2021) "Toward Full-Stack In Silico Synthetic Biology: Integrating Model Specification, Simulation, Verification, and Biological Compilation". ACS Synth. https://doi.org/10.1021/acssynbio.1c00143
217. Benjamin M. Gyori, John A. Bachman. (2021) "From knowledge to models: automated modeling in systems and synthetic biology". Current Opinion in Systems Biology, 100362, ISSN 2452-3100, https://doi.org/10.1016/j.coisb.2021.100362
216. Justin Vrana, Orlando de Lange, Yaoyu Yang, Garrett Newman, Ayesha Saleem, Abraham Miller, Cameron Cordray, Samer Halabiya, Michelle Parks, Eriberto Lopez, Sarah Goldberg, Benjamin Keller, Devin Strickland, Eric Klavins. (2021) "Aquarium: open-source laboratory software for design, execution and data management". Synthetic Biology, Volume 6, Issue 1, ysab006 https://doi.org/10.1093/synbio/ysab006
215. Christopher M. Whitford, Pablo Cruz-Morales, Jay D. Keasling, Tilmann Weber. (2021) "The Design-Build-Test-Learn cycle for metabolic engineering of Streptomycetes". Essays Biochem 65 (2): 261–275 https://doi.org/10.1042/EBC20200132
214. Jiefei Wang, Chao Zhang, and W. Seth Childers. (2021) "A Biosensor for Detection of Indole Metabolites". ACS Synthetic Biology 10 (7), 1605-1614 DOI: 10.1021/acssynbio.1c00090
213. Thomas A. Dixon, Thomas C. Williams, Isak S. Pretorius. (2021) "Bioinformational trends in grape and wine biotechnology". Trends in Biotechnology. https://doi.org/10.1016/j.tibtech.2021.05.001
212. Alaster D Moffat, Adam Elliston, Nicola J Patron, Andrew W Truman, Jose A Carrasco Lopez, A biofoundry workflow for the identification of genetic determinants of microbial growth inhibition, Synthetic Biology, Volume 6, Issue 1, 2021, ysab004, https://doi.org/10.1093/synbio/ysab004
211. Wang, Y., Cheng, H., Liu, Y. et al. In-situ generation of large numbers of genetic combinations for metabolic reprogramming via CRISPR-guided base editing. Nat Commun 12, 678 (2021). https://doi.org/10.1038/s41467-021-21003-y
210. Jianzhi Zhang, Yongcan Chen, Lihao Fu, Erpeng Guo, Bo Wang, Lei Dai, Tong Si. (2021) "Accelerating strain engineering in biofuel research via build and test automation of synthetic biology" Current Opinion in Biotechnology Volume 67, February 2021, Pages 88-98 https://doi.org/10.1016/j.copbio.2021.01.010
209. Pavan M. (2021) Setting Up an Automated Biomanufacturing Laboratory. In: Menolascina F. (eds) Synthetic Gene Circuits. Methods in Molecular Biology, vol 2229. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1032-9_5
208. Ashty S Karim, Fungmin Eric Liew, Shivani Garg, Bastian Vögeli, Blake J Rasor, Aislinn Gonnot, Marilene Pavan, Alex Juminaga, Séan D Simpson, Michael Köpke, and Michael C Jewett. (2020) "Modular cell-free expression plasmids to accelerate biological design in cells". OUP Synthetic Biology https://doi.org/10.1093/synbio/ysaa019
207. Irene Otero-Muras, Pablo Carbonell. (2020) "Automated engineering of synthetic metabolic pathways for efficient association to reaction rules.biomanufacturing". Metabolic Engineering https://doi.org/10.1016/j.ymben.2020.11.012
206. Zhongkang Li, Changhao Bi, et al. (2020) "Engineering the Calvin–Benson–Bassham cycle and hydrogen utilization pathway of Ralstonia eutropha for improved autotrophic growth and polyhydroxybutyrate production". Microbial Cell Factories doi.org/10.1186/s12934-020-01494-y
205. Stracquadanio G., Zulkower V. (2021) Computer Aided Assembly and Verification of Synthetic Chromosomes. In: Marchisio M.A. (eds) Computational Methods in Synthetic Biology. Methods in Molecular Biology, vol 2189. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0822-7_13
204. Garima Goyal, Nick Elsbree, Michael Fero, Nathan J. Hillson, and Gregory Linshiz. (2020) "Repurposing a microfluidic formulation device for automated DNA construction" PLOS One https://doi.org/10.1371/journal.pone.0242157
203. Chao Yang Zhi Li, Dongdong Zhao, Jing Chen, Xinna Zhu, Xueli Zhang, Changhao Bi. (2020) "Engineering an efficient H2 utilizing Escherichia coli platform by modulation of endogenous hydrogenases" Biochemical Engineering Journal 107851 https://doi.org/10.1016/j.bej.2020.107851
202. Mitchell G. Thompson, Matthew R. Incha, Allison N. Pearson, Matthias Schmidt, William A. Sharpless, Christopher B. Eiben, Pablo Cruz-Morales, Jacquelyn M. Blake-Hedges, Yuzhong Liu, Catharine A. Adams, Robert W. Haushalter, Rohith N. Krishna, Patrick Lichtner, Lars M. Blank, Aindrila Mukhopadhyay, Adam M. Deutschbauer, Patrick M. Shih, Jay D. Keasling. (2020) "Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing". Applied and Environmental Microbiology Oct 2020, 86 (21) e01665-20; DOI: 10.1128/AEM.01665-20
201. McLaughlin James Alastair, Beal Jacob, Mısırlı Göksel, Grünberg Raik, Bartley Bryan A., Scott-Brown James, Vaidyanathan Prashant, Fontanarrosa Pedro, Oberortner Ernst, Wipat Anil, Gorochowski Thomas E., Myers Chris J. (2020) "The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering" Frontiers in Bioengineering and Biotechnology 8, 1009. DOI 10.3389/fbioe.2020.01009
200. Maria Eugenia Inda and Timothy K. Lu. (2020). "Microbes as Biosensors". Annual Review of Microbiology 2020 74:1, 337-359. https://doi.org/10.1146/annurev-micro-022620-081059
199. Qi Gong, Bin Wang, Xubiao Lu, Jiantao Tan, Yuke Hou, Taoli Liu, Yao-Guang Liu, and Qinlong Zhu. (2020) "Nicking Endonuclease-Mediated Vector Construction Strategies for Plant Gene Functional Research" Plants 2020, 9(9), 1090; https://doi.org/10.3390/plants9091090
198. Fero M.J., Craft J.K., Vu T., and Hillson N.J. (2020) "Combinatorial-Hierarchical DNA Library Design Using the TeselaGen DESIGN Module with j5". In: Chandran S., George K. (eds) DNA Cloning and Assembly. Methods in Molecular Biology, vol 2205. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0908-8_2
197. Ernst Oberortner, Robert Evans, Xianwei Meng, Sangeeta Nath, Hector Plahar, Lisa Simirenko, Angela Tarver, Samuel Deutsch, Nathan J. Hillson, and Jan-Fang Cheng. (2020) "An Integrated Computer-Aided Design and Manufacturing Workflow for Synthetic Biology". In: Chandran S., George K. (eds) DNA Cloning and Assembly. Methods in Molecular Biology, vol 2205. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0908-8_1
196. Machens F., Hochrein L. (2020) "The AssemblX Toolkit for Reliable and User-Friendly Multigene Assemblies". In: Chandran S., George K. (eds) DNA Cloning and Assembly. Methods in Molecular Biology, vol 2205. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0908-8_3
195. Tao Zhan, Qian Chen, Chao Zhang, Changhao Bi, and Xueli Zhang. (2020) "Constructing a novel biosynthetic pathway for the production of glycolate from glycerol in Escherichia coli" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.0c00404
194. Zhao, D., Li, J., Li, S. et al. New base editors change C to A in bacteria and C to G in mammalian cells. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0592-2
193. Li Liu, Dongdong Zhao, Lijun Ye, Tao Zhan, Bin Xiong, Muzi Hu, Changhao Bi & Xueli Zhang. (2020) "A programmable CRISPR/Cas9-based phage defense system for Escherichia coli BL21(DE3)". Microbial Cell Factories volume 19, Article number: 136. https://microbialcellfactories.biomedcentral.com/articles/10.1186/s12934-020-01393-2
192. Mitchell G. Thompson, Jacquelyn M. Blake-Hedges, Jose Henrique Pereira, John A. Hangasky, Michael S. Belcher, William M. Moore, Jesus F. Barajas, Pablo Cruz-Morales, Lorenzo J. Washington, Robert W. Haushalter, Christopher B. Eiben, Yuzhong Liu, Will Skyrud, Veronica T. Benites, Tyler P. Barnum, Edward E. K. Baidoo, Henrik V. Scheller, Michael A. Marletta, Patrick M. Shih, Paul D. Adams & Jay D. Keasling. (2020) "An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism". Nature Communications volume 11, Article number: 2931
191. Hu, M., Xiong, B., Li, Z. et al. A novel gene expression system for Ralstonia eutropha based on the T7 promoter. BMC Microbiol 20, 121 (2020). https://doi.org/10.1186/s12866-020-01812-9
190. Mee‐Rye Park, Yan Chen, Mitchell Thompson, Veronica T. Benites, Bonnie Fong, Christopher J. Petzold, Edward E. K. Baidoo, John M. Gladden, Paul D. Adams, Jay D. Keasling, Blake A. Simmons, and Steven W. Singer. (2020) "Response of Pseudomonas putida to Complex, Aromatic‐Rich Fractions from Biomass" ChemSusChem https://doi.org/10.1002/cssc.202000268
189. Nicola J. Patron. O(2020) "Beyond natural: synthetic expansions of botanical form and function" New Phytologist. https://doi.org/10.1111/nph.16562
188. Changhao Bi, Bin Xiong, Muzi Hu, Zhongkang Li, Li Liu, Siwei Li, Chunzhi Zhang, Xueli Zhang. (2020) "A novel gene expression system for Ralstonia eutropha based on the T7 promoter", Applied & Industrial Microbiology - General Microbiology DOI:10.21203/rs.2.21274/v1
187. Joshua J. Timmons, Doug Densmore. (2020) "Repository-based plasmid design". PLOS https://doi.org/10.1371/journal.pone.0223935
186. Matthew R. Incha, Mitchell G. Thompson, Jacquelyn M.Blake-Hedges, Yuzhong Liu, Allison N. Pearson, Matthias Schmidt, Jennifer W. Gin, Christopher J. Petzold, Adam M. Deutschbauer, Jay D. Keasling. (2019) "Leveraging host metabolism for bisdemethoxycurcumin production in Pseudomonas putida" Metabolic Engineering Communications e00119 https://doi.org/10.1016/j.mec.2019.e00119
185 . Mitchell G Thompson, Allison N. Pearson, Jesus F. Barajas, Pablo Cruz-Morales, Nima Sedaghatian, Zak Costello, Megan E. Garber, Matthew R. Incha, Luis E. Valencia, Edward E.K. Baidoo, Hector Garcia Martin, Aindrila Mukhopadhyay, and Jay D Keasling. 2019 "Identification, characterization, and application of a highly sensitive lactam biosensor from Pseudomonas putida" ACS Synth. Biol. https://doi.org/10.1021/acssynbio.9b00292
184. Paul R. Jaschke, Gabrielle A. Dotson, Kay S. Hung, Diane Liu, and Drew Endy. (2019) "Definitive demonstration by synthesis of genome annotation completeness" PNAS 116 (48) 24206-24213 https://doi.org/10.1073/pnas.1905990116
183. Jonathan A. Goler, James M. Carothers, and Jay D. Keasling. (2014) "Dual-Selection for Evolution of In Vivo Functional Aptazymes as Riboswitch Parts" Artificial Riboswitches pp 221-235
182. Mitchell G. Thompson, Luis E. Valencia, Jacquelyn M. Blake-Hedges, Pablo Cruz-Morales, Alexandria E. Velasquez, Allison N. Pearson, Lauren N. Sermeno, William A. Sharpless, Veronica T. Benites, Yan Chen, Edward E.K. Baidoo, Christopher J. Petzold, Adam M. Deutschbauer, Jay D. Keasling. (2019) "Omics-driven identification and elimination of valerolactam catabolism in Pseudomonas putida KT2440 for increased product titer" Metabolic Engineering Communications, Volume 9, e00098 https://doi.org/10.1016/j.mec.2019.e00098
181. Fusun Yaman, Aaron Adler, and Jacob Beal. (2019) "Opportunities and Challenges in Applying Artificial Intelligence to Bioengineering" Automated Reasoning for Systems Biology and Medicine pp 425-452
180. Christophe Ladroue and Sara Kalvala. (2015) "Constraint-Based Genetic Compilation" International Conference on Algorithms for Computational Biology. AlCoB 2015: Algorithms for Computational Biology pp 25-38
179. Emily Scher, Shay B Cohen, Guido Sanguinetti. (2019) "PartCrafter: find, generate and analyze BioParts" Synthetic Biology, Volume 4, Issue 1 https://doi.org/10.1093/synbio/ysz014
178. Karthik Sekar, Roberto Rusconi, John T Sauls, Tobias Fuhrer, Elad Noor, Jen Nguyen, Vicente I Fernandez, Marieke F Buffing, Michael Berney, Suckjoon Jun, Roman Stocker, Uwe Sauer. (2018) "Synthesis and degradation of FtsZ quantitatively predict the first cell division in starved bacteria" Mol Syst Biol 14:e8623 https://doi.org/10.15252/msb.20188623
177. Jesus F. Barajas, Ryan P. McAndrew, Mitchell G. Thompson, Tyler W. H. Backman, Bo Pang, Tristan de Rond, Jose H. Pereira, Veronica T. Benites, Héctor García Martín, Edward E. K. Baidoo, Nathan J. Hillson, Paul D. Adams, Jay D. Keasling. (2019) "Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases" Journal of Industrial Microbiology & Biotechnology Volume 46, Issue 8, pp 1225–1235
176. Yang Liu, Xinyi Wan & Baojun Wang. (2019) "Engineered CRISPRa enables programmable eukaryote-like gene activation in bacteria" Nature Communications volume 10, Article number: 3693
175. Chris J. Myers, Jacob Beal, Thomas E. Gorochowski, Hiroyuki Kuwahara, Curtis Madsen, James Alastair McLaughlin, Göksel Mısırlı, Tramy Nguyen, Ernst Oberortner, Meher Samineni, Anil Wipat, Michael Zhang, Zach Zundel. (2017) "A standard-enabled workflow for synthetic biology" Biochem Soc Trans (2017) 45 (3): 793-803. https://doi.org/10.1042/BST20160347
174. Weninger A., Killinger M., Vogl T. (2016) "Key Methods for Synthetic Biology: Genome Engineering and DNA Assembly". In: Glieder A., Kubicek C., Mattanovich D., Wiltschi B., Sauer M. (eds) Synthetic Biology. Springer, Cham https://doi.org/10.1007/978-3-319-22708-5_3
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